MeanAbs

Measure allowing to compute mean of absolute intensities for shape. More...

Classes
class	ipsdk::imaproc::shape::analysis::MeanAbsMsr
	Measurement object for measure MeanAbs. More...
class	ipsdk::imaproc::shape::analysis::MeanAbsMsrInfo
	Information object for measure MeanAbs. More...

Detailed Description

Measure allowing to compute mean of absolute intensities for shape.

Mean of absolute values measure computes the mean of image pixel/voxel absolute intensities values associated to a 2d/3d shape.

Here is an example of mean of absolute values measurement in 2d case :

Author

E. Noirfalise

Date

2017/10/26

Copyright

2017 Reactiv'IP, all right reserved.

Measure allowing to compute mean of absolute values of intensities for shape

Measure synthesis :

Measure Type	Measure Unit Type	Parameter Type	Result Type	Shape Requirements
Generic	None	None	Value (ipsdk::ipReal64)	Row Intersections

See Shape measurement for additional information on these pictograms

Measure Type :

This is a generic measure

• it does not directly use shape or image data
• it can use dependencies to other measures to compute a result (see Measure Dependencies section)

This measure can be used in 2d and 3d case

Measure Unit Type:

Measure MeanAbs is not associated to any unit [ipsdk::shape::analysis::eMsrUnitFormat::eMUF_NoUnit]

Measure Parameter Type :

Measure MeanAbs has no parameters

Measure Result Type :

Measure MeanAbs is associated to ipsdk::shape::analysis::ValueMeasureResult<ipsdk::ipReal64> results

Measure Shape Requirements :

Measure MeanAbs requires row intersections from shape data

Measure Dependencies :

Measure MeanAbs depends on following measures :

Measure Mode	Measure Name	Measure Type	Measure Parameters
eMVP_2d3d	SumAbs	SumAbs
eMVP_2d	NbPixels	NbPixels2d
eMVP_3d	NbPixels	NbPixels3d

Note

See Shape Analysis 2d for more information on general shape 2d analysis and measurement usage.

See Shape Analysis 3d for more information on general shape 3d analysis and measurement usage.

Example of Python code :

Generic example in 2d case :

import PyIPSDK
import PyIPSDK.IPSDKIPLShapeAnalysis as shapeanalysis

    # Create the infoset
    inMeasureInfoSet2d = PyIPSDK.createMeasureInfoSet2d()
    PyIPSDK.createMeasureInfo(inMeasureInfoSet2d, "MeanAbsMsr")
    
    #Perform the analysis
    outMeasureSet = shapeanalysis.labelAnalysis2d(inGreyImg, inLabelImg2d, inMeasureInfoSet2d)
    
    # save results to csv format
    PyIPSDK.saveCsvMeasureFile(os.path.join(tmpPath,  "shape_analysis_results.csv"), outMeasureSet)
    
    # retrieve measure results
    outMsr = outMeasureSet.getMeasure("MeanAbsMsr")
    
    # retrieve measure values
    outMsrValues = outMsr.getMeasureResult().getColl(0)
    print("First label measurement equal " + str(outMsrValues[1]))

Generic example in 3d case :

import PyIPSDK
import PyIPSDK.IPSDKIPLShapeAnalysis as shapeanalysis

    # Create the infoset
    inMeasureInfoSet3d = PyIPSDK.createMeasureInfoSet3d()
    PyIPSDK.createMeasureInfo(inMeasureInfoSet3d, "MeanAbsMsr")
    
    #Perform the analysis
    outMeasureSet = shapeanalysis.labelAnalysis3d(inGreyImg, inLabelImg, inMeasureInfoSet3d)
    
    # save results to csv format
    PyIPSDK.saveCsvMeasureFile(os.path.join(tmpPath,  "shape_analysis_results.csv"), outMeasureSet)
    
    # retrieve measure results
    outMsr = outMeasureSet.getMeasure("MeanAbsMsr")
    
    # retrieve measure values
    outMsrValues = outMsr.getMeasureResult().getColl(0)
    print("First label measurement equal " + str(outMsrValues[1]))

Example of C++ code :

Example informations

Associated library

IPSDKIPLShapeAnalysis

Code Example

    // opening grey level input image
    ImagePtr pInGreyImg2d = loadTiffImageFile(inputGreyImgPath);

    // read entity shape 2d collection used for processing
    Shape2dCollPtr pShape2dColl = boost::make_shared<Shape2dColl>();
    IPSDK_REQUIRE(readFromXmlFile(inputShape2dCollPath, *pShape2dColl) == true);

    // define a measure info set
    MeasureInfoSetPtr pMeasureInfoSet = MeasureInfoSet::create2dInstance();
    createMeasureInfo(pMeasureInfoSet, "MeanAbsMsr");
    
    // compute measure on shape 2d collection
    MeasureSetPtr pOutMeasureSet = shapeAnalysis2d(pInGreyImg2d, pShape2dColl, pMeasureInfoSet);

    // retrieve associated results
    const MeasureConstPtr& pMeanAbsOutMsr = pOutMeasureSet->getMeasure("MeanAbsMsr");
    const ipsdk::shape::analysis::ValueMeasureResult<ipsdk::ipReal64>& outResults = static_cast<const ipsdk::shape::analysis::ValueMeasureResult<ipsdk::ipReal64>&>(pMeanAbsOutMsr->getMeasureResult());