FirstPixelZ

Measure returning the z-coordinate of the first pixel or voxel of shape. More...

Classes
class	ipsdk::imaproc::shape::analysis::FirstPixelZMsr
	Measurement object for measure FirstPixelZ. More...
class	ipsdk::imaproc::shape::analysis::FirstPixelZMsrInfo
	Information object for measure FirstPixelZ. More...

Detailed Description

Measure returning the z-coordinate of the first pixel or voxel of shape.

This measure returns the z-coordinate of the first pixel or voxel for each shape.

Here is an example of z-coordinates of first voxel measurement in 3d case :

Author

A. Eymar

Date

2022/02/03

Copyright

2022 Reactiv'IP, all right reserved.

Get the Z coordinate of the first pixel or voxel of each shape

Measure synthesis :

Measure Type	Measure Unit Type	Parameter Type	Result Type	Shape Requirements
Generic	None	None	Value (ipsdk::ipReal64)	Row Intersections

See Shape measurement for additional information on these pictograms

Measure Type :

This is a generic measure

• it does not directly use shape or image data
• it can use dependencies to other measures to compute a result (see Measure Dependencies section)

This measure can be used in 2d and 3d case

Measure Unit Type:

Measure FirstPixelZ is not associated to any unit [ipsdk::shape::analysis::eMsrUnitFormat::eMUF_NoUnit]

Measure Parameter Type :

Measure FirstPixelZ has no parameters

Measure Result Type :

Measure FirstPixelZ is associated to ipsdk::shape::analysis::ValueMeasureResult<ipsdk::ipReal64> results

Measure Shape Requirements :

Measure FirstPixelZ requires row intersections from shape data

Measure Dependencies :

Measure FirstPixelZ depends on following measures :

Measure Mode	Measure Name	Measure Type	Measure Parameters
eMVP_2d	FirstPixel	FirstPixel2d
eMVP_3d	FirstPixel	FirstPixel3d

Note

See Shape Analysis 2d for more information on general shape 2d analysis and measurement usage.

See Shape Analysis 3d for more information on general shape 3d analysis and measurement usage.

Example of Python code :

Generic example in 2d case :

import PyIPSDK
import PyIPSDK.IPSDKIPLShapeAnalysis as shapeanalysis

    # Create the infoset
    inMeasureInfoSet2d = PyIPSDK.createMeasureInfoSet2d()
    PyIPSDK.createMeasureInfo(inMeasureInfoSet2d, "FirstPixelZMsr")
    
    #Perform the analysis
    outMeasureSet = shapeanalysis.labelAnalysis2d(inGreyImg, inLabelImg2d, inMeasureInfoSet2d)
    
    # save results to csv format
    PyIPSDK.saveCsvMeasureFile(os.path.join(tmpPath,  "shape_analysis_results.csv"), outMeasureSet)
    
    # retrieve measure results
    outMsr = outMeasureSet.getMeasure("FirstPixelZMsr")
    
    # retrieve measure values
    outMsrValues = outMsr.getMeasureResult().getColl(0)
    print("First label measurement equal " + str(outMsrValues[1]))

Generic example in 3d case :

import PyIPSDK
import PyIPSDK.IPSDKIPLShapeAnalysis as shapeanalysis

    # Create the infoset
    inMeasureInfoSet3d = PyIPSDK.createMeasureInfoSet3d()
    PyIPSDK.createMeasureInfo(inMeasureInfoSet3d, "FirstPixelZMsr")
    
    #Perform the analysis
    outMeasureSet = shapeanalysis.labelAnalysis3d(inGreyImg, inLabelImg, inMeasureInfoSet3d)
    
    # save results to csv format
    PyIPSDK.saveCsvMeasureFile(os.path.join(tmpPath,  "shape_analysis_results.csv"), outMeasureSet)
    
    # retrieve measure results
    outMsr = outMeasureSet.getMeasure("FirstPixelZMsr")
    
    # retrieve measure values
    outMsrValues = outMsr.getMeasureResult().getColl(0)
    print("First label measurement equal " + str(outMsrValues[1]))

Example of C++ code :

Example informations

Associated library

IPSDKIPLShapeAnalysis

Code Example

    // opening grey level input image
    ImagePtr pInGreyImg3d = loadTiffImageFile(inputGreyImgPath);

    // read entity shape 3d collection used for processing
    Shape3dCollPtr pShape3dColl = boost::make_shared<Shape3dColl>();
    IPSDK_REQUIRE(readFromXmlFile(inputShape3dCollPath, *pShape3dColl) == true);

    // define a measure info set
    MeasureInfoSetPtr pMeasureInfoSet = MeasureInfoSet::create3dInstance();
    createMeasureInfo(pMeasureInfoSet, "FirstPixelZMsr");
    
    // compute measure on shape 3d collection
    MeasureSetPtr pOutMeasureSet = shapeAnalysis3d(pInGreyImg3d, pShape3dColl, pMeasureInfoSet);

    // retrieve associated results
    const MeasureConstPtr& pFirstPixelZOutMsr = pOutMeasureSet->getMeasure("FirstPixelZMsr");
    const ipsdk::shape::analysis::ValueMeasureResult<ipsdk::ipReal64>& outResults = static_cast<const ipsdk::shape::analysis::ValueMeasureResult<ipsdk::ipReal64>&>(pFirstPixelZOutMsr->getMeasureResult());