application of a color map on each 3D volume of an input grey-levels image More...

IPSDKIPLINTENSITYTRANSFORM_API ipsdk::image::ImagePtr	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::SmoothRgbColorMapConstPtr &pColorMap)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API ipsdk::image::ImagePtr	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::CyclicRgbColorMapConstPtr &pColorMap)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API ipsdk::image::ImagePtr	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::PlanIndexedSmoothRgbColorMapConstPtr &pPIColorMap)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API ipsdk::image::ImagePtr	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::PlanIndexedCyclicRgbColorMapConstPtr &pPIColorMap)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API void	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::SmoothRgbColorMapConstPtr &pColorMap, const ipsdk::image::ImagePtr &pOutImg)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API void	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::CyclicRgbColorMapConstPtr &pColorMap, const ipsdk::image::ImagePtr &pOutImg)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API void	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::PlanIndexedSmoothRgbColorMapConstPtr &pPIColorMap, const ipsdk::image::ImagePtr &pOutImg)
	wrapper function for application of a color map on an input grey image More...

IPSDKIPLINTENSITYTRANSFORM_API void	ipsdk::imaproc::itrans::colorMapping3dImg (const ipsdk::image::ImageConstPtr &pInImg3d, const ipsdk::imaproc::attr::PlanIndexedCyclicRgbColorMapConstPtr &pPIColorMap, const ipsdk::image::ImagePtr &pOutImg)
	wrapper function for application of a color map on an input grey image More...

Detailed Description

application of a color map on each 3D volume of an input grey-levels image

This algorithm applies a given color map to each 3D volume of an input grey-levels image with voxels values encoded with unsigned integers, in order to make the visualization of the input image easier for the user. This algorithm is a transposition of the Image color mapping 2d algorithm. See its documentation for more details.

Attributes description

Attribute description for algorithm :

Name	ToolTip	Default Initializer
ipsdk::imaproc::attr::InGreyUIntImg3d	[Input] 3d grey levels image (data contained in image buffer are unsigned integers)	X
ipsdk::imaproc::attr::InOptPISmoothRgbColorMap	[In Optional] Plan indexed collection of smooth RGB color maps	X
ipsdk::imaproc::attr::InOptPICyclicRgbColorMap	[In Optional] Plan indexed collection of cyclic RGB color maps	X
ipsdk::imaproc::attr::OutRgbUInt8Img	[Output] Rgb color uint8 image for processing operation	ipsdk::imaproc::duplicateRgbInOut (_pOutRgbUInt8Img, _pInGreyUIntImg3d, ipsdk::image::eImageBufferType::eIBT_UInt8)

Global Rule description

Global rule description for algorithm :
ipsdk::imaproc::matchSize (eMatchImageSizeType::eMIST_XYZT,_pInGreyUIntImg3d,_pOutRgbUInt8Img) &&
((ipsdk::processor::isSet (_pInOptPISmoothRgbColorMap) &&
  ipsdk::processor::Not (
   ipsdk::processor::isSet (_pInOptPICyclicRgbColorMap))) ||
(ipsdk::processor::isSet (_pInOptPICyclicRgbColorMap) &&
  ipsdk::processor::Not (
   ipsdk::processor::isSet (_pInOptPISmoothRgbColorMap)))) &&
ipsdk::processor::If (
ipsdk::processor::isSet (_pInOptPISmoothRgbColorMap),
ipsdk::imaproc::is2d (_pInOptPISmoothRgbColorMap) &&
ipsdk::imaproc::isGrey (_pInOptPISmoothRgbColorMap) &&
(ipsdk::imaproc::matchImagePlans (_pInOptPISmoothRgbColorMap,_pInGreyUIntImg3d,eImagePlansMatchPolicy::eIPMP_T) ||
  ipsdk::imaproc::isSingle (_pInOptPISmoothRgbColorMap)),
ipsdk::imaproc::is2d (_pInOptPICyclicRgbColorMap) &&
ipsdk::imaproc::isGrey (_pInOptPICyclicRgbColorMap) &&
(ipsdk::imaproc::matchImagePlans (_pInOptPICyclicRgbColorMap,_pInGreyUIntImg3d,eImagePlansMatchPolicy::eIPMP_T) ||
  ipsdk::imaproc::isSingle (_pInOptPICyclicRgbColorMap)))

Example of Python code :

Example imports

import PyIPSDK

import PyIPSDK.IPSDKIPLIntensityTransform as itrans

Code Example

    # opening of input images
    inImg = PyIPSDK.loadTiffImageFile(inImgPath)
    
    # application of color map on input image (1st signature test)
    outImg = itrans.colorMapping3dImg(inImg, colorMap)

Example of C++ code :

Example informations

Associated library

IPSDKIPLIntensityTransform

Header file

#include <IPSDKIPL/IPSDKIPLIntensityTransform/Processor/ColorMapping3dImg/ColorMapping3dImg.h>

Code Example

    ImagePtr pInImg = loadTiffImageFile(inImgFilePath, eTiffDirectoryMode::eTDM_Volume);
    const SmoothRgbColorMapPtr pColorMap =
        createSmoothRgbColorMap(ePredefinedSmoothRgbColorMapId::ePSRCMI_Viridis, eSmoothRgbColorMapRangeMode::eSRCMRM_ImageRange);
    ImagePtr pOutImg = colorMapping3dImg(pInImg, pColorMap);

See also: ColorMapping3dImgLvl1; ColorMapping3dImgLvl2

Function Documentation